The idle tests were failing because runs without runningProcesses
entries were being reaped by the orphan reaper before the idle
timeout pass could check them. Fix by spawning real child processes
and registering them in runningProcesses so the orphan reaper skips
them, allowing the idle timeout logic to evaluate them correctly.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- Consolidate duplicate running-runs query in reapOrphanedRuns by
reusing activeRuns for idle timeout pass (skip already-reaped runs)
- Add three integration tests: idle warning at 11 min, idle kill at
16 min, and no-warning with recent output
- Remove unreachable idle_timeout entry from statusBadge (idle-killed
runs have status "failed", not "idle_timeout")
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- Fix "keeps alive" test: set lastOutputAt to current time so idle
reaper doesn't kill the test run (seed used a stale date)
- Wire up lastOutputAt and startedAt params in test seed fixture
- Remove dead wasIdle variable in clearDetachedRunWarning
- Fix deferred lastOutputAt flush to use actual last output timestamp
instead of wall-clock time at flush
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Add lastOutputAt tracking on heartbeat runs, updated from adapter stdout/stderr
with batched DB writes (30s debounce). The orphan reaper now checks running
processes for idle timeout: warns at 10 min, kills (SIGTERM/SIGKILL) at 15 min.
- DB: add last_output_at column to heartbeat_runs (migration 0046)
- Server: idle warning/kill logic in reapOrphanedRuns, lastOutputAt flush in onLog
- Server: clear idle_warning on activity report (clearDetachedRunWarning)
- API: expose errorCode and lastOutputAt on active/recent run endpoints
- UI: orange idle warning badge on ActiveAgentsPanel and LiveRunWidget
- UI: show last output relative time in LiveRunWidget
- UI: add idle_timeout status color
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- probe host support on every platform instead of special-casing darwin
- re-export the db package helper from server and cli tests
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Add @deprecated JSDoc and inline comments to bootstrapPromptTemplate
references in agent-instructions and company-portability services.
This field is superseded by the managed instructions bundle system.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
New CEO agents created during onboarding now include explicit delegation
rules: triage tasks, route to CTO/CMO/UXDesigner, never do IC work, and
follow up on delegated work.
When CURSOR_API_KEY is not set, check ~/.cursor/cli-config.json for
authInfo from `agent login` before emitting the missing key warning.
Users authenticated via native login no longer see a false warning.
The previous documentation parenthetical "(defaulting to ~/.codex/skills/)"
was misleading because Paperclip almost always sets CODEX_HOME to a
per-company managed home. Update index.ts docs, skills.ts detail string,
and execute.ts inline comment to make the runtime path unambiguous.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
The previous commit incorrectly used resolveSharedCodexHomeDir() (~/.codex)
but Codex runs with CODEX_HOME set to a per-company managed home under
~/.paperclip/instances/. Skills injected into ~/.codex/skills/ would not
be discoverable by Codex. Now uses effectiveCodexHome directly.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
The Codex adapter was the only one injecting skills into
<cwd>/.agents/skills/, polluting the project's git repo. All other
adapters (Gemini, Cursor, etc.) use a home-based directory. This
changes the Codex adapter to inject into ~/.codex/skills/ (resolved
via resolveSharedCodexHomeDir) to match the established pattern.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Consolidate the env stub into beforeEach so the pre-existing cwd
test is also isolated from host OPENAI_API_KEY, avoiding
non-deterministic filesystem side effects.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Use vi.stubEnv to clear OPENAI_API_KEY in both new tests so they
don't silently pass the wrong branch when the key is set in the
test runner's environment.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Add tests for codex_native_auth_present and codex_openai_api_key_missing
code paths. Also pass adapter-configured CODEX_HOME through to
readCodexAuthInfo so the probe respects per-adapter home directories.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
The embedded-postgres library hardcodes --lc-messages=en_US.UTF-8 and
strips the parent process environment when spawning initdb/postgres.
In slim Docker images (e.g. node:20-bookworm-slim), the en_US.UTF-8
locale isn't installed, causing initdb to exit with code 1.
Two fixes applied:
1. Add --lc-messages=C to all initdbFlags arrays (overrides the
library's hardcoded locale since our flags come after in the spread)
2. pnpm patch on embedded-postgres to preserve process.env in spawn
calls, preventing loss of PATH, LD_LIBRARY_PATH, and other vars
Co-Authored-By: Paperclip <noreply@paperclip.ing>
- Drop entities package (CI blocks pnpm-lock.yaml on PRs; reset lockfile to master)
- Restore numeric + allowlisted named entity decoding in issues.ts
- Split Greptile mid-token & case into its own test with review comment
Made-with: Cursor
Addresses Greptile review on PR #1363: numeric entities decode via
code points; named entities use a small allowlist (amp, nbsp, etc.)
so M&M resolves correctly; unknown named entities are preserved.
Adds mid-token tests for & in agent names.
Made-with: Cursor
PAPERCLIP_MIGRATION_PROMPT=never was checked before
PAPERCLIP_MIGRATION_AUTO_APPLY=true, causing auto-apply to never
trigger when both env vars are set (as in dev:watch). Swap the
check order so AUTO_APPLY takes precedence.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Prevent company imports from re-enabling scheduler heartbeats on imported agents and cover both new-company and existing-company import flows in portability tests.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
Infer portable repo metadata from local git workspaces when repoUrl is missing, and collapse repeated task workspace export warnings into a single summary per missing workspace.
Co-Authored-By: Paperclip <noreply@paperclip.ing>
